WormFlux: mechanistic analysis of C. elegans metabolism

Metabolite Overview

Abbreviation .....................................................	:	pcollgpro
Name .....................................................	:	Procollagen L-proline (to be modified), etc.Procollagen L-proline
Model ID .....................................................	:	C01078
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C01078
Formula .....................................................	:	XH
Charge .....................................................	:	0
Localization .....................................................	:	Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	Not available
Other associations .....................................................	:	See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Collagen biosynthesis (c)

iCEL1314

Comments

Charge does not matter.

Reactions

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC03219Name: Procollagen-L-proline,2-oxoglutarate:oxygen oxidoreductase (4-hydroxylating) Type: Regular Location: Cytosol KEGG ID: R03219 click to see details on this item	1.14.11.2Name: procollagen-proline dioxygenase Other names: protocollagen hydroxylase, proline hydroxylase, proline,2-oxoglutarate 4-dioxygenase, collagen proline hydroxylase, hydroxylase, collagen proline, peptidyl proline hydroxylase, proline protocollagen hydroxylase, proline, 2-oxoglutarate dioxygenase, prolyl hydroxylase, prolylprotocollagen dioxygenase, prolylprotocollagen hydroxylase, protocollagen proline 4-hydroxylase, protocollagen proline dioxygenase, protocollagen proline hydroxylase, protocollagen prolyl hydroxylase, prolyl 4-hydroxylase, prolyl-glycyl-peptide, 2-oxoglutarate:oxygen oxidoreductase, 4-hydroxylating, procollagen-proline 4-dioxygenase click to see details on this item	[c] : akgName: 2-Oxoglutarate Formula: C5H4O5 Charge: -2 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item + pcollgproName: Procollagen L-proline (to be modified) Formula: XH Charge: 0 click to see details on this item		pcollg4hproName: Procollagen trans-4-hydroxy-L-proline Formula: XOH Charge: 0 click to see details on this item + co2Name: CO2 Formula: CO2 Charge: 0 click to see details on this item + succName: Succinate Formula: C4H4O4 Charge: -2 click to see details on this item	C14E2.4 \| Y43F8B.19 \| dpy-18 \| phy-2 \| phy-3 \| phy-4	Collagen biosynthesis
RCC0170Name: Procollagen synthesis (unmodified protein) Type: Regular Location: Cytosol KEGG ID: NA click to see details on this item	Not applicable	[c] : (2.0) gtpName: GTP Formula: C10H12N5O14P3 Charge: -4 click to see details on this item + (0.324) atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + (2.324) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + (0.072072) alatrnaName: L-Alanyl-tRNA(Ala) Formula: C3H7NO2R Charge: 1 click to see details on this item + (0.048116) argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + (0.033015) asntrnaName: L-Asparaginyl-tRNA(Asn) Formula: C4H8N2O3R Charge: 1 click to see details on this item + (0.049284) asptrnaName: L-Aspartyl-tRNA(Asp) Formula: C4H6NO4R Charge: 0 click to see details on this item + (0.027047) cystrnaName: L-Cysteinyl-tRNA(Cys) Formula: C3H7NO2SR Charge: 1 click to see details on this item + (0.049537) glutrnaName: L-Glutamyl-tRNA(Glu) Formula: C5H8NO4R Charge: 0 click to see details on this item + (0.046288) glntrnaName: L-Glutaminyl-tRNA(Gln) Formula: C5H10N2O3R Charge: 1 click to see details on this item + (0.195952) glytrnaName: Glycyl-tRNA(Gly) Formula: C2H5NO2R Charge: 1 click to see details on this item + (0.014203) histrnaName: L-Histidyl-tRNA(His) Formula: C6H9N3O2R Charge: 1 click to see details on this item + (0.027694) iletrnaName: L-Isoleucyl-tRNA(Ile) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.033232) leutrnaName: L-Leucyl-tRNA(Leu) Formula: C6H13NO2R Charge: 1 click to see details on this item + (0.036365) lystrnaName: L-Lysine-tRNA (Lys) Formula: C6H15N2O2R Charge: 2 click to see details on this item + (0.017249) mettrnaName: L-Methionyl-tRNA (Met) Formula: C5H11NO2SR Charge: 1 click to see details on this item + (0.017276) phetrnaName: L-Phenylalanyl-tRNA(Phe) Formula: C9H11NO2R Charge: 1 click to see details on this item + (0.167533) protrnaName: L-Prolyl-tRNA(Pro) Formula: C5H9NO2R Charge: 1 click to see details on this item + (0.051072) sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item + (0.042924) thrtrnaName: L-Threonyl-tRNA(Thr) Formula: C4H9NO3R Charge: 1 click to see details on this item + (0.004785) trptrnaName: L-Tryptophanyl-tRNA(Trp) Formula: C11H12N2O2R Charge: 1 click to see details on this item + (0.022921) tyrtrnaName: L-Tyrosyl-tRNA(Tyr) Formula: C9H11NO3R Charge: 1 click to see details on this item + (0.043435) valtrnaName: L-Valyl-tRNA(Val) Formula: C5H11NO2R Charge: 1 click to see details on this item		(0.921682) pcollg_restName: Procollagen (unmodified portion) Formula: X Charge: 0 click to see details on this item + (0.006239) pcollglysName: Procollagen L-lysine (to be modified) Formula: XH Charge: 1 click to see details on this item + (0.072079) pcollgproName: Procollagen L-proline (to be modified) Formula: XH Charge: 0 click to see details on this item + (2.0) gdpName: GDP Formula: C10H12N5O11P2 Charge: -3 click to see details on this item + (0.324) adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + (3.324) hName: H+ Formula: H Charge: 1 click to see details on this item + (2.324) piName: Phosphate Formula: HO4P Charge: -2 click to see details on this item + (0.072072) trnaalaName: tRNA(Ala) Formula: ROH Charge: 0 click to see details on this item + (0.048116) trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item + (0.033015) trnaasnName: tRNA(Asn) Formula: ROH Charge: 0 click to see details on this item + (0.049284) trnaaspName: tRNA(Asp) Formula: ROH Charge: 0 click to see details on this item + (0.027047) trnacysName: tRNA(Cys) Formula: ROH Charge: 0 click to see details on this item + (0.049537) trnagluName: tRNA (Glu) Formula: ROH Charge: 0 click to see details on this item + (0.046288) trnaglnName: tRNA(Gln) Formula: ROH Charge: 0 click to see details on this item + (0.195952) trnaglyName: tRNA(Gly) Formula: ROH Charge: 0 click to see details on this item + (0.014203) trnahisName: tRNA(His) Formula: ROH Charge: 0 click to see details on this item + (0.027694) trnaileName: tRNA(Ile) Formula: ROH Charge: 0 click to see details on this item + (0.033232) trnaleuName: tRNA(Leu) Formula: ROH Charge: 0 click to see details on this item + (0.036365) trnalysName: tRNA(Lys) Formula: ROH Charge: 0 click to see details on this item + (0.017249) trnametName: tRNA(Met) Formula: ROH Charge: 0 click to see details on this item + (0.017276) trnapheName: tRNA(Phe) Formula: ROH Charge: 0 click to see details on this item + (0.167533) trnaproName: tRNA(Pro) Formula: ROH Charge: 0 click to see details on this item + (0.051072) trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item + (0.042924) trnathrName: tRNA(Thr) Formula: ROH Charge: 0 click to see details on this item + (0.004785) trnatrpName: tRNA(Trp) Formula: ROH Charge: 0 click to see details on this item + (0.022921) trnatyrName: tRNA(Tyr) Formula: ROH Charge: 0 click to see details on this item + (0.043435) trnavalName: tRNA(Val) Formula: ROH Charge: 0 click to see details on this item	Not applicable	Miscellaneous

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