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  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Metabolite Overview
Abbreviation ..................................................... : pcollgpro
Name ..................................................... : Procollagen L-proline (to be modified), etc.Procollagen L-proline
Model ID ..................................................... : C01078
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C01078
Formula ..................................................... : XH
Charge ..................................................... : 0
Localization ..................................................... : Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : Not available
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space
.....................................................
: Collagen biosynthesis (c)
Comments
  • Charge does not matter.

  • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.
    Pathway
    Not applicable
    [c] : (2.0) gtpName: GTP
    Formula: C10H12N5O14P3
    Charge: -4




    click to see details on this item
    + (0.324) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




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    + (2.324) h2oName: H2O
    Formula: H2O
    Charge: 0




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    + (0.072072) alatrnaName: L-Alanyl-tRNA(Ala)
    Formula: C3H7NO2R
    Charge: 1




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    + (0.048116) argtrnaName: L-Arginyl-tRNA(Arg)
    Formula: C6H15N4O2R
    Charge: 2




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    + (0.033015) asntrnaName: L-Asparaginyl-tRNA(Asn)
    Formula: C4H8N2O3R
    Charge: 1




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    + (0.049284) asptrnaName: L-Aspartyl-tRNA(Asp)
    Formula: C4H6NO4R
    Charge: 0




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    + (0.027047) cystrnaName: L-Cysteinyl-tRNA(Cys)
    Formula: C3H7NO2SR
    Charge: 1




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    + (0.049537) glutrnaName: L-Glutamyl-tRNA(Glu)
    Formula: C5H8NO4R
    Charge: 0




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    + (0.046288) glntrnaName: L-Glutaminyl-tRNA(Gln)
    Formula: C5H10N2O3R
    Charge: 1




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    + (0.195952) glytrnaName: Glycyl-tRNA(Gly)
    Formula: C2H5NO2R
    Charge: 1




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    + (0.014203) histrnaName: L-Histidyl-tRNA(His)
    Formula: C6H9N3O2R
    Charge: 1




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    + (0.027694) iletrnaName: L-Isoleucyl-tRNA(Ile)
    Formula: C6H13NO2R
    Charge: 1




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    + (0.033232) leutrnaName: L-Leucyl-tRNA(Leu)
    Formula: C6H13NO2R
    Charge: 1




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    + (0.036365) lystrnaName: L-Lysine-tRNA (Lys)
    Formula: C6H15N2O2R
    Charge: 2




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    + (0.017249) mettrnaName: L-Methionyl-tRNA (Met)
    Formula: C5H11NO2SR
    Charge: 1




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    + (0.017276) phetrnaName: L-Phenylalanyl-tRNA(Phe)
    Formula: C9H11NO2R
    Charge: 1




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    + (0.167533) protrnaName: L-Prolyl-tRNA(Pro)
    Formula: C5H9NO2R
    Charge: 1




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    + (0.051072) sertrnaName: L-Seryl-tRNA(Ser)
    Formula: C3H7NO3R
    Charge: 1




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    + (0.042924) thrtrnaName: L-Threonyl-tRNA(Thr)
    Formula: C4H9NO3R
    Charge: 1




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    + (0.004785) trptrnaName: L-Tryptophanyl-tRNA(Trp)
    Formula: C11H12N2O2R
    Charge: 1




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    + (0.022921) tyrtrnaName: L-Tyrosyl-tRNA(Tyr)
    Formula: C9H11NO3R
    Charge: 1




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    + (0.043435) valtrnaName: L-Valyl-tRNA(Val)
    Formula: C5H11NO2R
    Charge: 1




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    (0.921682) pcollg_restName: Procollagen (unmodified portion)
    Formula: X
    Charge: 0




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    + (0.006239) pcollglysName: Procollagen L-lysine (to be modified)
    Formula: XH
    Charge: 1




    click to see details on this item
    + (0.072079) pcollgproName: Procollagen L-proline (to be modified)
    Formula: XH
    Charge: 0




    click to see details on this item
    + (2.0) gdpName: GDP
    Formula: C10H12N5O11P2
    Charge: -3




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    + (0.324) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




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    + (3.324) hName: H+
    Formula: H
    Charge: 1




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    + (2.324) piName: Phosphate
    Formula: HO4P
    Charge: -2




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    + (0.072072) trnaalaName: tRNA(Ala)
    Formula: ROH
    Charge: 0




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    + (0.048116) trnaargName: tRNA(Arg)
    Formula: ROH
    Charge: 0




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    + (0.033015) trnaasnName: tRNA(Asn)
    Formula: ROH
    Charge: 0




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    + (0.049284) trnaaspName: tRNA(Asp)
    Formula: ROH
    Charge: 0




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    + (0.027047) trnacysName: tRNA(Cys)
    Formula: ROH
    Charge: 0




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    + (0.049537) trnagluName: tRNA (Glu)
    Formula: ROH
    Charge: 0




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    + (0.046288) trnaglnName: tRNA(Gln)
    Formula: ROH
    Charge: 0




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    + (0.195952) trnaglyName: tRNA(Gly)
    Formula: ROH
    Charge: 0




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    + (0.014203) trnahisName: tRNA(His)
    Formula: ROH
    Charge: 0




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    + (0.027694) trnaileName: tRNA(Ile)
    Formula: ROH
    Charge: 0




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    + (0.033232) trnaleuName: tRNA(Leu)
    Formula: ROH
    Charge: 0




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    + (0.036365) trnalysName: tRNA(Lys)
    Formula: ROH
    Charge: 0




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    + (0.017249) trnametName: tRNA(Met)
    Formula: ROH
    Charge: 0




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    + (0.017276) trnapheName: tRNA(Phe)
    Formula: ROH
    Charge: 0




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    + (0.167533) trnaproName: tRNA(Pro)
    Formula: ROH
    Charge: 0




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    + (0.051072) trnaserName: tRNA(Ser)
    Formula: ROH
    Charge: 0




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    + (0.042924) trnathrName: tRNA(Thr)
    Formula: ROH
    Charge: 0




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    + (0.004785) trnatrpName: tRNA(Trp)
    Formula: ROH
    Charge: 0




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    + (0.022921) trnatyrName: tRNA(Tyr)
    Formula: ROH
    Charge: 0




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    + (0.043435) trnavalName: tRNA(Val)
    Formula: ROH
    Charge: 0




    click to see details on this item
    Not applicable
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