Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

WormClustClustering- and enrichment-based association of genes with the metabolic network

Walhout Lab web page:
walhoutlab.umassmed.edu

Email for WormFlux:
lutfu.yilmaz@umassmed.edu

WormFlux News

The model was updated (from iCEL1273 to iCEL1314) in 2020. You can reach the former model at iCEL1273.

The current metabolic network model is iCEL1314. You can:

• Use the orange buttons to explore the network or modify the biomass parameters.
• Use the Download button to obtain this model in different formats.
• Log in with an academic account and use the FBA button for predictive flux balance analysis.
• Use the PEA button to perform pathway enrichment analysis for a set of genes of interest.

for anything for a gene for an enzyme for a reaction for a metabolite for a pathway

(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:

• ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
• * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

The information and tools provided in this website are to be used for academic purposes only. Potential users of the flux analysis tools (FBA button in the vertical menu) are asked to show proof of working at an academic institution during the creation of their accounts. These mathematical tools are powered by the commercial software Gurobi.