Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

Metabolite Overview

Abbreviation .....................................................	:	arg-L
Name .....................................................	:	L-Arginine, etc.(S)-2-Amino-5-guanidinovaleric acid, L-Arg
Model ID .....................................................	:	C00062
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00062
Formula .....................................................	:	C6H15N4O2
Charge .....................................................	:	+1
Localization .....................................................	:	Extracellular, Cytosol, Mitochondria
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	arg-L
Other associations .....................................................	:	See reaction table below (8 reactions in total)
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Arginine metabolism (c)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC03646Name: L-Arginine:tRNA(Arg) ligase (AMP-forming) Type: Regular Location: Cytosol KEGG ID: R03646 click to see details on this item	6.1.1.19Name: arginine---tRNA ligase Other names: arginyl-tRNA synthetase, arginyl-transfer ribonucleate synthetase, arginyl-transfer RNA synthetase, arginyl transfer ribonucleic acid synthetase, arginine-tRNA synthetase, arginine translase click to see details on this item	[c] : arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item		ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item	rars-1	Aminoacyl-tRNA biosynthesis
RM03646Name: L-Arginine:tRNA(Arg) ligase (AMP-forming) Type: Regular Location: Mitochondria KEGG ID: R03646 click to see details on this item	6.1.1.19Name: arginine---tRNA ligase Other names: arginyl-tRNA synthetase, arginyl-transfer ribonucleate synthetase, arginyl-transfer RNA synthetase, arginyl transfer ribonucleic acid synthetase, arginine-tRNA synthetase, arginine translase click to see details on this item	[m] : arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + trnaargName: tRNA(Arg) Formula: ROH Charge: 0 click to see details on this item		ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + argtrnaName: L-Arginyl-tRNA(Arg) Formula: C6H15N4O2R Charge: 2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item	rars-2	Aminoacyl-tRNA biosynthesis
RC00551Name: L-Arginine amidinohydrolase Type: Regular Location: Cytosol KEGG ID: R00551 click to see details on this item	3.5.3.1Name: arginase Other names: arginine amidinase, canavanase, L-arginase, arginine transamidinase click to see details on this item	[c] : arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		ornName: Ornithine Formula: C5H13N2O2 Charge: 1 click to see details on this item + ureaName: Urea Formula: CH4N2O Charge: 0 click to see details on this item	T21F4.1	Arginine metabolism
RC00554Name: ATP:L-arginine Nomega-phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00554 click to see details on this item	2.7.3.3Name: arginine kinase Other names: arginine phosphokinase, adenosine 5'-triphosphate: L-arginine phosphotransferase, adenosine 5'-triphosphate-arginine phosphotransferase, ATP:L-arginine N-phosphotransferasel ATP:L-arginine omega-N-phosphotransferase click to see details on this item	[c] : arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + argpName: L-Arginine phosphate Formula: C6H14N4O5P Charge: -1 click to see details on this item	argk-1 | W10C8.5 | ZC434.8 | F32B5.1	Arginine metabolism
DGR0001Name: Bacterial peptide degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	3.4.23.-Name: bacterial peptide degradation click to see details on this item 3.4.-.-Name: bacterial peptide degradation Other names: protein lysine peptidase click to see details on this item	[c] : protein_BACName: Protein component of bacterial diet Formula: X Charge: 0 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		(0.096044) ala-LName: L-Alanine Formula: C3H7NO2 Charge: 0 click to see details on this item + (0.055304) arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item + (0.04507) asn-LName: L-Asparagine Formula: C4H8N2O3 Charge: 0 click to see details on this item + (0.04507) asp-LName: L-Aspartate Formula: C4H6NO4 Charge: -1 click to see details on this item + (0.017123) cys-LName: L-Cysteine Formula: C3H7NO2S Charge: 0 click to see details on this item + (0.049203) glu-LName: L-Glutamate Formula: C5H8NO4 Charge: -1 click to see details on this item + (0.049203) gln-LName: L-Glutamine Formula: C5H10N2O3 Charge: 0 click to see details on this item + (0.114544) glyName: Glycine Formula: C2H5NO2 Charge: 0 click to see details on this item + (0.017713) his-LName: L-Histidine Formula: C6H9N3O2 Charge: 0 click to see details on this item + (0.05432) ile-LName: L-Isoleucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.084235) leu-LName: L-Leucine Formula: C6H13NO2 Charge: 0 click to see details on this item + (0.064161) lys-LName: L-Lysine Formula: C6H15N2O2 Charge: 1 click to see details on this item + (0.028735) met-LName: L-Methionine Formula: C5H11NO2S Charge: 0 click to see details on this item + (0.034639) phe-LName: L-Phenylalanine Formula: C9H11NO2 Charge: 0 click to see details on this item + (0.04133) pro-LName: L-Proline Formula: C5H9NO2 Charge: 0 click to see details on this item + (0.040346) ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + (0.047432) thr-LName: L-Threonine Formula: C4H9NO3 Charge: 0 click to see details on this item + (0.010628) trp-LName: L-Tryptophan Formula: C11H12N2O2 Charge: 0 click to see details on this item + (0.025782) tyr-LName: L-Tyrosine Formula: C9H11NO3 Charge: 0 click to see details on this item + (0.079118) val-LName: L-Valine Formula: C5H11NO2 Charge: 0 click to see details on this item	asp-1 | asp-2 | asp-3 | asp-5 | K12H4.7	Bacterial digestion
TCM0094Name: L-Arginine transport Type: Transport Location: Cytosol, Mitochondria KEGG ID: NA click to see details on this item	Not applicable	arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item[c]		arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item[m]	Not determined	Transport
TCE1208Name: L-Arginine transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item[e]		arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item[c]	Not determined	Transport
EX00062Name: L-Arginine exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	arg-LName: L-Arginine Formula: C6H15N4O2 Charge: 1 click to see details on this item[e]			Not applicable	Exchange with the environment

The information and tools provided in this website are to be used for academic purposes only. Potential users of the flux analysis tools (FBA button in the vertical menu) are asked to show proof of working at an academic institution during the creation of their accounts. These mathematical tools are powered by the commercial software Gurobi.