HOME DOWNLOAD CITATION HELP
Umass Logo PSB Logo
(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Metabolite Overview
Abbreviation ..................................................... : drib
Name ..................................................... : Deoxyribose, etc.2-Deoxy-D-erythro-pentose, Thyminose, 2-Deoxy-D-ribose
Model ID ..................................................... : C01801
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C01801
Formula ..................................................... : C5H10O4
Charge ..................................................... : 0
Localization ..................................................... : Extracellular, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : drib
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Pentose phosphate pathway (c,e)
Comments
ERROR
Reactions
ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses. 		Pathway
RC02750Name: 2-Deoxy-D-ribose 5-phosphate + ADP <=> Deoxyribose + ATP
Type: Regular
Location: Cytosol
KEGG ID: R02750

click to see details on this item
2.7.1.15Name: ribokinase
Other names: deoxyribokinase, ribokinase (phosphorylating), D-ribokinase

click to see details on this item
[c] : atpName: ATP
Formula: C10H12N5O13P3
Charge: -4




click to see details on this item + dribName: Deoxyribose
Formula: C5H10O4
Charge: 0




click to see details on this item
2dr5pName: 2-Deoxy-D-ribose 5-phosphate
Formula: C5H9O7P
Charge: -2




click to see details on this item + adpName: ADP
Formula: C10H12N5O10P2
Charge: -3




click to see details on this item + hName: H+
Formula: H
Charge: 1




click to see details on this item
F07A11.5
Pentose phosphate pathway
TCE0745Name: Deoxyribose transport
Type: Transport
Location: Cytosol, Extracellular
KEGG ID: NA

click to see details on this item
Not applicable
dribName: Deoxyribose
Formula: C5H10O4
Charge: 0




click to see details on this item[e]
dribName: Deoxyribose
Formula: C5H10O4
Charge: 0




click to see details on this item[c]
Not determined
Transport
EX01801Name: Deoxyribose exchange
Type: Exchange
Location: Extracellular
KEGG ID: NA

click to see details on this item
Not applicable
dribName: Deoxyribose
Formula: C5H10O4
Charge: 0




click to see details on this item[e]
Not applicable
Exchange with the environment
The information and tools provided in this website are to be used for academic purposes only. Potential users of the flux analysis tools (FBA button in the vertical menu) are asked to show proof of working at an academic institution during the creation of their accounts. These mathematical tools are powered by the commercial software Gurobi.