Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

Metabolite Overview

Abbreviation .....................................................	:	ddca
Name .....................................................	:	Dodecanoate (n-C12:0), etc.Dodecanoic acid, Dodecanoate, Dodecylcarboxylate, Lauric acid
Model ID .....................................................	:	C02679
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C02679
Formula .....................................................	:	C12H23O2
Charge .....................................................	:	-1
Localization .....................................................	:	Extracellular, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	ddca
Other associations .....................................................	:	See reaction table below.
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Peroxisomal fatty acid degradation (c)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RCC0055Name: fatty-acid--CoA ligase (dodecanoate) Type: Regular Location: Cytosol KEGG ID: R00390 click to see details on this item	6.2.1.3Name: long-chain-fatty-acid---CoA ligase Other names: acyl-CoA synthetase, fatty acid thiokinase (long chain), acyl-activating enzyme, palmitoyl-CoA synthase, lignoceroyl-CoA synthase, arachidonyl-CoA synthetase, acyl coenzyme A synthetase, acyl-CoA ligase, palmitoyl coenzyme A synthetase, thiokinase, palmitoyl-CoA ligase, acyl-coenzyme A ligase, fatty acid CoA ligase, long-chain fatty acyl coenzyme A synthetase, oleoyl-CoA synthetase, stearoyl-CoA synthetase, long chain fatty acyl-CoA synthetase, long-chain acyl CoA synthetase, fatty acid elongase, LCFA synthetase, pristanoyl-CoA synthetase, ACS3, long-chain acyl-CoA synthetase I, long-chain acyl-CoA synthetase II, fatty acyl-coenzyme A synthetase, long-chain acyl-coenzyme A synthetase, FAA1 click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + coaName: Coenzyme A Formula: C21H32N7O16P3S Charge: -4 click to see details on this item + ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item		ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + ddcacoaName: Dodecanoyl-CoA (n-C12:0CoA) Formula: C33H54N7O17P3S Charge: -4 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item	acs-2 | acs-3 | acs-4 | acs-5 | acs-13 | acs-15 | acs-17 | acs-18	Peroxisomal fatty acid degradation
DGR0016Name: Bacterial lipa (inner LPS and first two monomers of outer section) degradation Type: Degradation Location: Cytosol KEGG ID: NA click to see details on this item	To be determined	[c] : lipa_BACName: KDO(2)-lipid (A) Formula: C110H196N2O39P2 Charge: -6 click to see details on this item + (4) nadhName: Nicotinamide adenine dinucleotide - reduced Formula: C21H27N7O14P2 Charge: -2 click to see details on this item + (5) h2oName: H2O Formula: H2O Charge: 0 click to see details on this item		ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item + (5) ttdcaName: tetradecanoate (n-C14:0) Formula: C14H27O2 Charge: -1 click to see details on this item + (4) nadName: Nicotinamide adenine dinucleotide Formula: C21H26N7O14P2 Charge: -1 click to see details on this item + (2) r5pName: alpha-D-Ribose 5-phosphate Formula: C5H9O8P Charge: -2 click to see details on this item + (2) pyrName: Pyruvate Formula: C3H3O3 Charge: -1 click to see details on this item + (2) gamName: D-Glucosamine Formula: C6H14NO5 Charge: 1 click to see details on this item	Not determined	Bacterial digestion
TCE5327Name: Dodecanoate (n-C12:0) transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item[c]		ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item[e]	Not determined	Transport
EX02679Name: Dodecanoate (n-C12:0) exchange Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	ddcaName: Dodecanoate (n-C12:0) Formula: C12H23O2 Charge: -1 click to see details on this item[e]			Not applicable	Exchange with the environment

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