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  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Metabolite Overview
Abbreviation ..................................................... : outerlps_BAC
Name ..................................................... : Outer section of lipopolysaccharide (bacteria)
Model ID ..................................................... : CC0057
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : C61H101N2O49
Charge ..................................................... : -1
Localization ..................................................... : Extracellular, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : Not available
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Not yet represented in WormPaths maps.
Comments
  • Charge is obvious based on general rules and similar compounds.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    DGR0013Name: Bacterial LPS degradation into lipa (inner LPS plus first two outer monomers) and outerlps_BAC (the rest of LPS)
    Type: Degradation
    Location: Extracellular
    KEGG ID: NA

    click to see details on this item
    To be determined
    [e] : lps_BACName: Lipopolysaccharide (bacteria)
    Formula: C171H297N4O88P2
    Charge: -7




    click to see details on this item
    lipa_BACName: KDO(2)-lipid (A)
    Formula: C110H196N2O39P2
    Charge: -6




    click to see details on this item     + outerlps_BACName: Outer section of lipopolysaccharide (bacteria)
    Formula: C61H101N2O49
    Charge: -1




    click to see details on this item
    Not determined
    Bacterial digestion
    DGR0015Name: Bacterial outer LPS (except for the first two monomers embedded in lipa) uptake
    Type: Degradation
    Location: Cytosol, Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    outerlps_BACName: Outer section of lipopolysaccharide (bacteria)
    Formula: C61H101N2O49
    Charge: -1




    click to see details on this item    [e]
    outerlps_BACName: Outer section of lipopolysaccharide (bacteria)
    Formula: C61H101N2O49
    Charge: -1




    click to see details on this item    [c]
    Not applicable
    Bacterial digestion
    DGR0017Name: Bacterial outer LPS (except for the first two monomers embedded in lipa) degradation
    Type: Degradation
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    To be determined
    [c] : outerlps_BACName: Outer section of lipopolysaccharide (bacteria)
    Formula: C61H101N2O49
    Charge: -1




    click to see details on this item     + (10) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (4) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item     + (2) nadhName: Nicotinamide adenine dinucleotide - reduced
    Formula: C21H27N7O14P2
    Charge: -2




    click to see details on this item
    (9) glc-D-AName: alpha-D-Glucose
    Formula: C6H12O6
    Charge: 0




    click to see details on this item     + (2) ethaName: Ethanolamine
    Formula: C2H8NO
    Charge: 1




    click to see details on this item     + pyrName: Pyruvate
    Formula: C3H3O3
    Charge: -1




    click to see details on this item     + (2) nadName: Nicotinamide adenine dinucleotide
    Formula: C21H26N7O14P2
    Charge: -1




    click to see details on this item
    Not determined
    Bacterial digestion
    EXC0057Name: Outer section of lipopolysaccharide (bacteria) exchange
    Type: Exchange
    Location: Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    outerlps_BACName: Outer section of lipopolysaccharide (bacteria)
    Formula: C61H101N2O49
    Charge: -1




    click to see details on this item    [e]
    Not applicable
    Exchange with the environment
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