HOME DOWNLOAD CITATION HELP
Umass Logo PSB Logo
(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Metabolite Overview
Abbreviation ..................................................... : pg_BAC
Name ..................................................... : Phosphatidylglycerol (bacteria)
Model ID ..................................................... : CC0059
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : C8H12O10PR2
Charge ..................................................... : -1
Localization ..................................................... : Extracellular, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : pglyc_hs, pg190, pg181, pg180, pg161, pg160190, pg160, pg141, pg140, pg120, pg_SA, pg_EC, pg_HP, pg_SC
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Not yet represented in WormPaths maps.
Comments
  • Charge is based on matching BiGG compounds.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    DGR0005Name: Bacterial phospholipid composition
    Type: Degradation
    Location: Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [e] : phospholipid_BACName: phospholipid component of E. coli diet
    Formula: X
    Charge: 0




    click to see details on this item
    (0.179791) pg_BACName: Phosphatidylglycerol (bacteria)
    Formula: C8H12O10PR2
    Charge: -1




    click to see details on this item     + (0.750046) pe_BACName: Phosphatidylethanolamine (bacteria)
    Formula: C7H12NO8PR2
    Charge: 0




    click to see details on this item     + (0.020146) ps_BACName: Phosphatidylserine (bacteria)
    Formula: C8H11NO10PR2
    Charge: -1




    click to see details on this item     + (0.050017) clpn_BACName: Cardiolipin (bacteria)
    Formula: C13H16O17P2R4
    Charge: -2




    click to see details on this item
    Not applicable
    Bacterial digestion
    DGR0020Name: Bacterial phosphatidylglycerol uptake
    Type: Degradation
    Location: Cytosol, Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    pg_BACName: Phosphatidylglycerol (bacteria)
    Formula: C8H12O10PR2
    Charge: -1




    click to see details on this item    [e]
    pg_BACName: Phosphatidylglycerol (bacteria)
    Formula: C8H12O10PR2
    Charge: -1




    click to see details on this item    [c]
    Not applicable
    Bacterial digestion
    DGR0021Name: Bacterial phosphatidylglycerol degradation
    Type: Degradation
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    3.1.1.4Name: phospholipase A2
    Other names: lecithinase A, phosphatidase, phosphatidolipase, phospholipase A

    click to see details on this item
    [c] : pg_BACName: Phosphatidylglycerol (bacteria)
    Formula: C8H12O10PR2
    Charge: -1




    click to see details on this item     + (3) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item
    glyc3pName: Glycerol 3-phosphate
    Formula: C3H7O6P
    Charge: -2




    click to see details on this item     + glycName: Glycerol
    Formula: C3H8O3
    Charge: 0




    click to see details on this item     + (2) Rtotal_BACName: R total from bacterial diet
    Formula: RCO2
    Charge: -1




    click to see details on this item     + (3) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    ipla-1 | ipla-2 | ipla-3 | ipla-4 | ipla-5 | ipla-6 | ipla-7 | C07E3.9 | Y69A2AL.2
    Bacterial digestion
    DGR0023Name: Bacterial cardiolipin degradation (major components)
    Type: Degradation
    Location: Cytosol
    KEGG ID: NA

    click to see details on this item
    To be determined
    [c] : clpn_BACName: Cardiolipin (bacteria)
    Formula: C13H16O17P2R4
    Charge: -2




    click to see details on this item     + h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item
    pg_BACName: Phosphatidylglycerol (bacteria)
    Formula: C8H12O10PR2
    Charge: -1




    click to see details on this item     + pa_BACName: Phosphatidate (bacteria)
    Formula: C5H5O8PR2
    Charge: -2




    click to see details on this item     + hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    Not determined
    Bacterial digestion
    EXC0059Name: Phosphatidylglycerol (bacteria) exchange
    Type: Exchange
    Location: Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    pg_BACName: Phosphatidylglycerol (bacteria)
    Formula: C8H12O10PR2
    Charge: -1




    click to see details on this item    [e]
    Not applicable
    Exchange with the environment
    The information and tools provided in this website are to be used for academic purposes only. Potential users of the flux analysis tools (FBA button in the vertical menu) are asked to show proof of working at an academic institution during the creation of their accounts. These mathematical tools are powered by the commercial software Gurobi.