WormFlux: mechanistic analysis of C. elegans metabolism

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Use wild characters " ? " and " * " for efficient search:

? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
* : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.

Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

Enzyme Overview

Enzyme (?) Identification in Enzyme Commission (EC) numbering system. .....................................................	:	6.1.1.11
Name .....................................................	:	Serine---tRNA ligase, etc.Seryl-tRNA synthetase, SerRS, Seryl-transfer ribonucleate synthetase, Seryl-transfer RNA synthetase, Seryl-transfer ribonucleic acid synthetase, Serine translase
KO (?) The KEGG orthology group (KO) that is associated with this enzyme. .....................................................	:	K01875SARS serS; seryl-tRNA synthetase [EC:6.1.1.11]
Genes .....................................................	:	sars-1, sars-2
Localization .....................................................	:	Cytosol, Mitochondria
Other associations .....................................................	:	See reaction table below.

External links

KEGG

BRENDA

Reactions

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC03662Name: L-Serine:tRNA(Ser) ligase (AMP-forming) Type: Regular Location: Cytosol KEGG ID: R03662 click to see details on this item	6.1.1.11Name: serine---tRNA ligase Other names: seryl-tRNA synthetase, SerRS, seryl-transfer ribonucleate synthetase, seryl-transfer RNA synthetase, seryl-transfer ribonucleic acid synthetase, serine translase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item	ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item	sars-1	Aminoacyl-tRNA biosynthesis
RM03662Name: L-Serine:tRNA(Ser) ligase (AMP-forming) Type: Regular Location: Mitochondria KEGG ID: R03662 click to see details on this item	6.1.1.11Name: serine---tRNA ligase Other names: seryl-tRNA synthetase, SerRS, seryl-transfer ribonucleate synthetase, seryl-transfer RNA synthetase, seryl-transfer ribonucleic acid synthetase, serine translase click to see details on this item	[m] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + trnaserName: tRNA(Ser) Formula: ROH Charge: 0 click to see details on this item	ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + sertrnaName: L-Seryl-tRNA(Ser) Formula: C3H7NO3R Charge: 1 click to see details on this item	sars-2	Aminoacyl-tRNA biosynthesis
RC08218Name: L-serine:tRNASec ligase (AMP-forming) Type: Regular Location: Cytosol KEGG ID: R08218 click to see details on this item	6.1.1.11Name: serine---tRNA ligase Other names: seryl-tRNA synthetase, SerRS, seryl-transfer ribonucleate synthetase, seryl-transfer RNA synthetase, seryl-transfer ribonucleic acid synthetase, serine translase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + ser-LName: L-Serine Formula: C3H7NO3 Charge: 0 click to see details on this item + trnasecName: tRNA(Sec) Formula: ROH Charge: 0 click to see details on this item	ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + sertrna_secName: L-Seryl-tRNA(Sec) Formula: C3H7NO3R Charge: 1 click to see details on this item	sars-1	Aminoacyl-tRNA biosynthesis
RCC0181Name: Selenocysteine:tRNASec ligase (AMP-forming) Type: Regular Location: Cytosol KEGG ID: NA click to see details on this item	6.1.1.11Name: serine---tRNA ligase Other names: seryl-tRNA synthetase, SerRS, seryl-transfer ribonucleate synthetase, seryl-transfer RNA synthetase, seryl-transfer ribonucleic acid synthetase, serine translase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + selcysName: Selenocysteine Formula: C3H7NO2Se Charge: 0 click to see details on this item + trnasecName: tRNA(Sec) Formula: ROH Charge: 0 click to see details on this item	ampName: AMP Formula: C10H12N5O7P Charge: -2 click to see details on this item + ppiName: Diphosphate Formula: HO7P2 Charge: -3 click to see details on this item + sectrnaName: L-Selenocysteinyl-tRNA(Sec) Formula: C3H7NO2SeR Charge: 1 click to see details on this item	sars-1	Selenocompound metabolism

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