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  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
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Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Reaction Overview
Model ID ..................................................... : RCC0227
Name ..................................................... : very long chain ascaroside ((w-1)-ascr-C27) synthesis
Type (?)

One of the following categories:

Regular: Regular enzymatic reactions that do not fit in any special categories below
Biomass: Reactions that represent the assembly of the worm biomass
Degradation: Reactions that represent the degradation of the bacterial diet
Demand: Reactions that consume products in the compartment that they are produced
Sink: Reactions that can not only consume but also provide a metabolite in a particular compartment (e.g., storage reactions)
Transport: Reactions that transport material between different compartments
Exchange: Reactions that exchange metabolites with the environment
.....................................................
: Regular
KEGG ID (?) Reactions in KEGG database that match this reaction.

Multiple IDs typically indicate that the model reaction is a merged reaction.
.....................................................
: Not available
Is in PRIME model (?) Indicates whether the reaction is part of the PRIME model, which is the basis (minimum model) for proper biomass/energy generation and compartmentalization. ..................................................... : No
Reversibility ..................................................... : Irreversible
Localization ..................................................... : Cytosol
Other annotation ..................................................... : See tabular representation below.
Comments
  • GAP filler reaction to make (w-1) C27:0 ascarosyl fatty acid from C28:0 fatty acid. The actual pathway is yet unknown. To obtain a mass-balanced reaction, P450-type oxidation and decarboxylation were assumed to take place.
  • See also note #37.

  • ► | Localization scores (click to view)▼ | Localization scores (click to hide)
    Not available
    ► | Reversibility scores (click to view)▼ | Reversibility scores (click to hide)
    Not available
    Reaction
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.
    Pathway
    Not applicable
    Unknown
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