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Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Reaction Overview
Model ID ..................................................... : RMC0182
Name ..................................................... : rhodoquinone-9 biosynthesis
Type (?)

One of the following categories:

Regular: Regular enzymatic reactions that do not fit in any special categories below
Biomass: Reactions that represent the assembly of the worm biomass
Degradation: Reactions that represent the degradation of the bacterial diet
Demand: Reactions that consume products in the compartment that they are produced
Sink: Reactions that can not only consume but also provide a metabolite in a particular compartment (e.g., storage reactions)
Transport: Reactions that transport material between different compartments
Exchange: Reactions that exchange metabolites with the environment
..................................................... 		: Regular
KEGG ID (?) Reactions in KEGG database that match this reaction.

Multiple IDs typically indicate that the model reaction is a merged reaction. ..................................................... 		: Not available
Is in PRIME model (?) Indicates whether the reaction is part of the PRIME model, which is the basis (minimum model) for proper biomass/energy generation and compartmentalization. ..................................................... : No
Reversibility ..................................................... : Irreversible
Localization ..................................................... : Mitochondria
Other annotation ..................................................... : See tabular representation below.
Comments
  • Unknown pathway. An unbalanced reaction was taken from MetaCyc and mass-balanced using nadh and protons.
  • See also note #21.

    • ► | Localization scores (click to view)▼ | Localization scores (click to hide)
    Not available
    ► | Reversibility scores (click to view)▼ | Reversibility scores (click to hide)
    Not available
    Reaction
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    RMC0182Name: rhodoquinone-9 biosynthesis
    Type: Regular
    Location: Mitochondria
    KEGG ID: NA

    click to see details on this item
    Unknown
    [m] : q9Name: Ubiquinone-9
    Formula: C54H82O4
    Charge: 0




    click to see details on this item     + nh4Name: Ammonium
    Formula: H4N
    Charge: 1




    click to see details on this item     + h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item     + (3) nadName: Nicotinamide adenine dinucleotide
    Formula: C21H26N7O14P2
    Charge: -1




    click to see details on this item
    rq9Name: Rhodoquinone-9
    Formula: C53H81NO3
    Charge: 0




    click to see details on this item     + co2Name: CO2
    Formula: CO2
    Charge: 0




    click to see details on this item     + (3) nadhName: Nicotinamide adenine dinucleotide - reduced
    Formula: C21H27N7O14P2
    Charge: -2




    click to see details on this item     + (4) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item
    Unknown
    Ubiquinone metabolism
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