HOME DOWNLOAD CITATION HELP
Umass Logo PSB Logo
(?) Enter a search word or phrase (left box), optionally select an appropriate field (middle), and hit the search button or press enter. This search engine is NOT case sensitive.

Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Metabolite Overview
Abbreviation ..................................................... : adocbl
Name ..................................................... : Adenosylcobalamin, etc.Cobamide coenzyme, Adenosylcob(III)alamin, Deoxyadenosylcobalamin, Cobamamide, Vitamin B12 coenzyme, 5,6-Dimethylbenzimidazolyl-5-deoxyadenosyl-cobamide, (5'-Deoxy-5'-adenosyl)cobamide coenzyme, (5,6-Dimethylbenzimidazolyl)cobamide coenzyme, alpha-(5,6-Dimethylbenzimidazolyl)cobamide coenzyme, 5'-Deoxy-5'-adenosylcobalamin, 5'-Deoxy-5'-adenosyl vitamin B12, 5'-Deoxy-5'-adenosyl-5,6-dimethylbenzimidazolylcobamide, 5,6-Dimethylbenzimidazolyl-Co-5'-deoxy-5'-adenosylcobamide, Calomide, Cobalamin coenzyme, Coenzyme B12, DMBC coenzyme, Dibencozide, Funacomide
Model ID ..................................................... : C00194
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : C00194
Formula ..................................................... : C72H100CoN18O17P
Charge ..................................................... : 0
Localization ..................................................... : Extracellular, Cytosol, Mitochondria
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : adocbl
Other associations ..................................................... : See reaction table below (7 reactions in total)

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space
.....................................................
: Not yet represented in WormPaths maps.
Comments
ERROR
Reactions
ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
& indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.
Pathway
Not applicable
(0.00625) mobdName: Molybdate
Formula: MoO4
Charge: -2




click to see details on this item
+ (0.0002) q8Name: Ubiquinone-8
Formula: C49H74O4
Charge: 0




click to see details on this item
+ (0.0002) thmName: Thiamin
Formula: C12H17N4OS
Charge: 1




click to see details on this item
+ (0.000903) thmppName: Thiamine diphosphate
Formula: C12H16N4O7P2S
Charge: -2




click to see details on this item
+ (0.0002) adocblName: Adenosylcobalamin
Formula: C72H100CoN18O17P
Charge: 0




click to see details on this item
+ (0.0002) selcysName: Selenocysteine
Formula: C3H7NO2Se
Charge: 0




click to see details on this item
+ (0.0002) cbl1Name: Cob(I)alamin
Formula: C62H88CoN13O14P
Charge: -1




click to see details on this item
+ (0.000443) ribflvName: Riboflavin
Formula: C17H20N4O6
Charge: 0




click to see details on this item
+ (0.0002) phemeName: Protoheme
Formula: C34H30FeN4O4
Charge: 0




click to see details on this item
+ (0.0002) pydxnName: Pyridoxine
Formula: C8H11NO3
Charge: 0




click to see details on this item
+ (0.000893) fe2Name: Fe2+
Formula: Fe
Charge: 2




click to see details on this item
+ (0.0002) pydamName: Pyridoxamine
Formula: C8H13N2O2
Charge: 1




click to see details on this item
+ (0.001172) fmnName: FMN
Formula: C17H19N4O9P
Charge: -2




click to see details on this item
+ (0.0002) folName: Folate
Formula: C19H18N7O6
Charge: -1




click to see details on this item
+ (0.004018) acornName: N2-Acetyl-L-ornithine
Formula: C7H14N2O3
Charge: 0




click to see details on this item
+ (0.0002) pnto-RName: (R)-Pantothenate
Formula: C9H16NO5
Charge: -1




click to see details on this item
+ (0.002774) fadName: Flavin adenine dinucleotide oxidized
Formula: C27H31N9O15P2
Charge: -2




click to see details on this item
+ (0.0002) pydxName: Pyridoxal
Formula: C8H9NO3
Charge: 0




click to see details on this item
+ (0.0002) tmaName: trimethylamine
Formula: C3H10N
Charge: 1




click to see details on this item
+ (0.0002) acserName: O-Acetyl-L-serine
Formula: C5H9NO4
Charge: 0




click to see details on this item
Not applicable
Not applicable
Not applicable
Not applicable
Not determined
Not applicable
Not determined
Not applicable
Not applicable
Not applicable
The information and tools provided in this website are to be used for academic purposes only. Potential users of the flux analysis tools (FBA button in the vertical menu) are asked to show proof of working at an academic institution during the creation of their accounts. These mathematical tools are powered by the commercial software Gurobi.