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Use wild characters " ? " and " * " for efficient search:
  • ? : A single character. E.g., trehalose?phosphatase covers both trehalose phosphatase and trehalose-phosphatase, of which, only the latter fits the nomenclature used in this database.
  • * : Any number of characters. E.g.,tre-* brings all genes from trehalase family; coenzyme*A covers coenzyme A, coenzyme-A, and coenzymeA.
Network Biomass WormPaths
FBAFlux Balance Analysis PEAPathway Enrichment Analysis
Metabolite Overview
Abbreviation ..................................................... : soluble_BAC
Name ..................................................... : Soluble pool in bacterial diet
Model ID ..................................................... : CC0072
KEGG ID (?) Compounds in KEGG database that match this compound. ..................................................... : Not available
Formula ..................................................... : X
Charge ..................................................... : 0
Localization ..................................................... : Extracellular
BiGG matches (?) Compounds in BiGG database that match this compound. ..................................................... : Not available
Other associations ..................................................... : See reaction table below.

In WormPaths (?) Pathway maps where this metabolite is represented are listed here.

Letters after map name indicate the compartments the metabolite is placed in the map:

(c) Cytosol
(m) Mitochondria
(e) Extracellular space ..................................................... 		: Not yet represented in WormPaths maps.
Comments
  • Charge does not matter.

    • Reactions
    ID Enzyme Reactants Products Genes (?) Multiple genes are separated by OR (I) or AND (&).

    I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme).
    & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme).

    If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.     		Pathway
    DGR0006Name: Bacterial soluble pool composition
    Type: Degradation
    Location: Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    [e] : soluble_BACName: Soluble pool in bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item
    (0.00625) mobdName: Molybdate
    Formula: MoO4
    Charge: -2




    click to see details on this item     + (0.0002) q8Name: Ubiquinone-8
    Formula: C49H74O4
    Charge: 0




    click to see details on this item     + (0.0002) thmName: Thiamin
    Formula: C12H17N4OS
    Charge: 1




    click to see details on this item     + (0.000903) thmppName: Thiamine diphosphate
    Formula: C12H16N4O7P2S
    Charge: -2




    click to see details on this item     + (0.0002) adocblName: Adenosylcobalamin
    Formula: C72H100CoN18O17P
    Charge: 0




    click to see details on this item     + (0.0002) selcysName: Selenocysteine
    Formula: C3H7NO2Se
    Charge: 0




    click to see details on this item     + (0.0002) cbl1Name: Cob(I)alamin
    Formula: C62H88CoN13O14P
    Charge: -1




    click to see details on this item     + (0.000443) ribflvName: Riboflavin
    Formula: C17H20N4O6
    Charge: 0




    click to see details on this item     + (0.0002) phemeName: Protoheme
    Formula: C34H30FeN4O4
    Charge: 0




    click to see details on this item     + (0.0002) pydxnName: Pyridoxine
    Formula: C8H11NO3
    Charge: 0




    click to see details on this item     + (0.000893) fe2Name: Fe2+
    Formula: Fe
    Charge: 2




    click to see details on this item     + (0.0002) pydamName: Pyridoxamine
    Formula: C8H13N2O2
    Charge: 1




    click to see details on this item     + (0.001172) fmnName: FMN
    Formula: C17H19N4O9P
    Charge: -2




    click to see details on this item     + (0.0002) folName: Folate
    Formula: C19H18N7O6
    Charge: -1




    click to see details on this item     + (0.004018) acornName: N2-Acetyl-L-ornithine
    Formula: C7H14N2O3
    Charge: 0




    click to see details on this item     + (0.0002) pnto-RName: (R)-Pantothenate
    Formula: C9H16NO5
    Charge: -1




    click to see details on this item     + (0.002774) fadName: Flavin adenine dinucleotide oxidized
    Formula: C27H31N9O15P2
    Charge: -2




    click to see details on this item     + (0.0002) pydxName: Pyridoxal
    Formula: C8H9NO3
    Charge: 0




    click to see details on this item     + (0.0002) tmaName: trimethylamine
    Formula: C3H10N
    Charge: 1




    click to see details on this item     + (0.0002) acserName: O-Acetyl-L-serine
    Formula: C5H9NO4
    Charge: 0




    click to see details on this item
    Not applicable
    Bacterial digestion
    DGR0007Name: Bacterial degradation
    Type: Degradation
    Location: Cytosol, Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    BACName: Bacteria in diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (6.0) atpName: ATP
    Formula: C10H12N5O13P3
    Charge: -4




    click to see details on this item    [c] + (6.0) h2oName: H2O
    Formula: H2O
    Charge: 0




    click to see details on this item    [c]
    (0.129212) phospholipid_BACName: phospholipid component of E. coli diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (5.037126) protein_BACName: Protein component of bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (0.027377) peptido_BACName: Peptidoglycan subunit of bacteria
    Formula: C40H62N8O21
    Charge: -2




    click to see details on this item    [e] + (0.135796) glycogen_BACName: glycogen
    Formula: C6H10O5
    Charge: 0




    click to see details on this item    [e] + soluble_BACName: Soluble pool in bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (0.008331) lps_BACName: Lipopolysaccharide (bacteria)
    Formula: C171H297N4O88P2
    Charge: -7




    click to see details on this item    [e] + (0.099745) dna_BACName: DNA component of bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (0.636031) rna_BACName: RNA component of bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e] + (6.0) adpName: ADP
    Formula: C10H12N5O10P2
    Charge: -3




    click to see details on this item    [c] + (6.0) hName: H+
    Formula: H
    Charge: 1




    click to see details on this item    [c] + (6.0) piName: Phosphate
    Formula: HO4P
    Charge: -2




    click to see details on this item    [c]
    Not applicable
    Bacterial digestion
    EXC0072Name: Soluble pool in bacterial diet exchange
    Type: Exchange
    Location: Extracellular
    KEGG ID: NA

    click to see details on this item
    Not applicable
    soluble_BACName: Soluble pool in bacterial diet
    Formula: X
    Charge: 0




    click to see details on this item    [e]
    Not applicable
    Exchange with the environment
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