Network Biomass WormPaths

FBAFlux Balance Analysis PEAPathway Enrichment Analysis

Metabolite Overview

Abbreviation .....................................................	:	pydx
Name .....................................................	:	Pyridoxal
Model ID .....................................................	:	C00250
KEGG ID (?) Compounds in KEGG database that match this compound. .....................................................	:	C00250
Formula .....................................................	:	C8H9NO3
Charge .....................................................	:	0
Localization .....................................................	:	Extracellular, Cytosol
BiGG matches (?) Compounds in BiGG database that match this compound. .....................................................	:	pydx
Other associations .....................................................	:	See reaction table below (6 reactions in total)
In WormPaths (?) Pathway maps where this metabolite is represented are listed here. Letters after map name indicate the compartments the metabolite is placed in the map: (c) Cytosol (m) Mitochondria (e) Extracellular space .....................................................	:	Vitamin B6 metabolism (c)

iCEL1314

Reactions

ID

Enzyme

Reactants

Products

Genes (?) Multiple genes are separated by OR (I) or AND (&). I indicates that genes are redundant within the group (e.g. paralogs encoding the same enzyme). & indicates that genes are non-redundant within the group (e.g. genes encoding different subunits of the same enzyme). If there are multiple groups of genes, as in an enzyme complex with some enzymes associated with multiple genes, or in a case where the same enzyme is associated with different orthology groups with paralogs, each group with multiple genes is shown in parentheses.

Pathway

RC00174Name: ATP:pyridoxal 5-phosphotransferase Type: Regular Location: Cytosol KEGG ID: R00174 click to see details on this item	2.7.1.35Name: pyridoxal kinase Other names: pyridoxal kinase (phosphorylating), pyridoxal 5-phosphate-kinase, pyridoxal phosphokinase, pyridoxine kinase click to see details on this item	[c] : atpName: ATP Formula: C10H12N5O13P3 Charge: -4 click to see details on this item + pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item		adpName: ADP Formula: C10H12N5O10P2 Charge: -3 click to see details on this item + hName: H+ Formula: H Charge: 1 click to see details on this item + pydx5pName: Pyridoxal 5'-phosphate Formula: C8H8NO6P Charge: -2 click to see details on this item	pdxk-1	Vitamin B6 metabolism
RC01710Name: Pyridoxamine:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R01710 click to see details on this item	1.4.3.5Name: pyridoxal 5'-phosphate synthase Other names: pyridoxamine 5'-phosphate oxidase, pyridoxamine phosphate oxidase, pyridoxine (pyridoxamine)phosphate oxidase, pyridoxine (pyridoxamine) 5'-phosphate oxidase, pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), pyridoxamine-phosphate oxidase, PdxH click to see details on this item	[c] : pydamName: Pyridoxamine Formula: C8H13N2O2 Charge: 1 click to see details on this item + h2oName: H2O Formula: H2O Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + nh4Name: Ammonium Formula: H4N Charge: 1 click to see details on this item + h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item	F57B9.1	Vitamin B6 metabolism
RC01711Name: Pyridoxine:oxygen oxidoreductase (deaminating) Type: Regular Location: Cytosol KEGG ID: R01711 click to see details on this item	1.4.3.5Name: pyridoxal 5'-phosphate synthase Other names: pyridoxamine 5'-phosphate oxidase, pyridoxamine phosphate oxidase, pyridoxine (pyridoxamine)phosphate oxidase, pyridoxine (pyridoxamine) 5'-phosphate oxidase, pyridoxaminephosphate oxidase (EC 1.4.3.5: deaminating), PMP oxidase, pyridoxol-5'-phosphate:oxygen oxidoreductase (deaminating) (incorrect), pyridoxamine-phosphate oxidase, PdxH click to see details on this item	[c] : pydxnName: Pyridoxine Formula: C8H11NO3 Charge: 0 click to see details on this item + o2Name: O2 Formula: O2 Charge: 0 click to see details on this item		pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + h2o2Name: Hydrogen peroxide Formula: H2O2 Charge: 0 click to see details on this item	F57B9.1	Vitamin B6 metabolism
DGR0006Name: Bacterial soluble pool composition Type: Degradation Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	[e] : soluble_BACName: Soluble pool in bacterial diet Formula: X Charge: 0 click to see details on this item		(0.00625) mobdName: Molybdate Formula: MoO4 Charge: -2 click to see details on this item + (0.0002) q8Name: Ubiquinone-8 Formula: C49H74O4 Charge: 0 click to see details on this item + (0.0002) thmName: Thiamin Formula: C12H17N4OS Charge: 1 click to see details on this item + (0.000903) thmppName: Thiamine diphosphate Formula: C12H16N4O7P2S Charge: -2 click to see details on this item + (0.0002) adocblName: Adenosylcobalamin Formula: C72H100CoN18O17P Charge: 0 click to see details on this item + (0.0002) selcysName: Selenocysteine Formula: C3H7NO2Se Charge: 0 click to see details on this item + (0.0002) cbl1Name: Cob(I)alamin Formula: C62H88CoN13O14P Charge: -1 click to see details on this item + (0.000443) ribflvName: Riboflavin Formula: C17H20N4O6 Charge: 0 click to see details on this item + (0.0002) phemeName: Protoheme Formula: C34H30FeN4O4 Charge: 0 click to see details on this item + (0.0002) pydxnName: Pyridoxine Formula: C8H11NO3 Charge: 0 click to see details on this item + (0.000893) fe2Name: Fe2+ Formula: Fe Charge: 2 click to see details on this item + (0.0002) pydamName: Pyridoxamine Formula: C8H13N2O2 Charge: 1 click to see details on this item + (0.001172) fmnName: FMN Formula: C17H19N4O9P Charge: -2 click to see details on this item + (0.0002) folName: Folate Formula: C19H18N7O6 Charge: -1 click to see details on this item + (0.004018) acornName: N2-Acetyl-L-ornithine Formula: C7H14N2O3 Charge: 0 click to see details on this item + (0.0002) pnto-RName: (R)-Pantothenate Formula: C9H16NO5 Charge: -1 click to see details on this item + (0.002774) fadName: Flavin adenine dinucleotide oxidized Formula: C27H31N9O15P2 Charge: -2 click to see details on this item + (0.0002) pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item + (0.0002) tmaName: trimethylamine Formula: C3H10N Charge: 1 click to see details on this item + (0.0002) acserName: O-Acetyl-L-serine Formula: C5H9NO4 Charge: 0 click to see details on this item	Not applicable	Bacterial digestion
EX00250Name: pyridoxal exchange/defecation Type: Exchange Location: Extracellular KEGG ID: NA click to see details on this item	Not applicable	pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item[e]			Not applicable	Exchange with the environment
TCE0450Name: Pyridoxal transport Type: Transport Location: Cytosol, Extracellular KEGG ID: NA click to see details on this item	Not applicable	pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item[e]		pydxName: Pyridoxal Formula: C8H9NO3 Charge: 0 click to see details on this item[c]	Not determined	Transport

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